PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011350001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 275aa    MW: 30911.5 Da    PI: 9.5173
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011350001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2384e-1247103155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+++GV++++++gr++A+++d +s+n   k+k  + g ++ +e Aa+a++ a++k++g
  GSVIVT01011350001  47 SRFRGVSRHRWTGRFEAHLWDkFSWNVtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 103
                        789********************997784446666.9*******************98 PP

2AP253.17.8e-17146197155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  GSVIVT01011350001 146 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 197
                        89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-947103IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1447113IPR016177DNA-binding domain
CDDcd000184.56E-1647113No hitNo description
PROSITE profilePS5103218.00448111IPR001471AP2/ERF domain
SMARTSM003802.0E-1648117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-1248112IPR001471AP2/ERF domain
PRINTSPR003671.6E-54960IPR001471AP2/ERF domain
CDDcd000182.82E-23146207No hitNo description
PfamPF008472.8E-12146197IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-18146207IPR016177DNA-binding domain
PROSITE profilePS5103218.953147205IPR001471AP2/ERF domain
SMARTSM003802.7E-26147211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-18147206IPR001471AP2/ERF domain
PRINTSPR003671.6E-5187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MFSTNIIFLS LKIENREWFF FFFFQQQQLP NQQPDQASAA TTVKRSSRFR GVSRHRWTGR  60
FEAHLWDKFS WNVTQKKKGK QGAYDEEESA ARAYDLAALK YWGASTFTNF PVSDYEKEIE  120
IMQSVTKEEY LACLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYST  180
QEEAARAYDI AAIEYRGINA VTNFDLSTYI RWLNPAANNP VVPHESRANT EPQALASSNF  240
TAETLGEGGG GLAGSVVAMM GSGGEEGFSE VGGK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4233453e-98AM423345.2 Vitis vinifera contig VV78X088191.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661026.11e-147PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6X5Y63e-88WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLA5ACS01e-160A5ACS0_VITVI; Putative uncharacterized protein
STRINGVIT_14s0108g00050.t011e-160(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-89AP2 family protein